Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 17 August 1990:
Vol. 249. no. 4970, pp. 783 - 786
DOI: 10.1126/science.1697102

Articles

Science, Vol 249, Issue 4970, 783-786
Copyright © 1990 by American Association for the Advancement of Science


articles

External guide sequences for an RNA enzyme

AC Forster and S Altman

Department of Biology, Yale University, New Haven, CT 06520.

Ribonuclease P (RNase P) from Escherichia coli or its catalytic RNA subunit can efficiently cleave small RNA substrates that lack the conserved features of natural substrates of RNase P if an additional small RNA is also present. This additional RNA must contain a sequence complementary to the substrate [external guide sequence (EGS)] and a 3'-proximal CCA sequence to ensure cleavage. The aminoacyl acceptor stem and some additional 5'- and 3'-terminal sequences of a precursor transfer RNA are sufficient to allow efficient cleavage by RNAase P, and the 2'-hydroxyl group at the cleavage site is not absolutely necessary for cleavage. In principle, any RNA could be targeted by a custom-designed EGS RNA for specific cleavage by RNase P in vitro or in vivo.


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Effective inhibition in animals of viral pathogenesis by a ribozyme derived from RNase P catalytic RNA.
Y. Bai, P. Trang, H. Li, K. Kim, T. Zhou, and F. Liu (2008)
PNAS 105, 10919-10924
   Abstract »    Full Text »    PDF »
Inhibition of expression of virulence genes of Yersinia pestis in Escherichia coli by external guide sequences and RNase P.
J.-h. Ko, M. Izadjoo, and S. Altman (2008)
RNA 14, 1656-1662
   Abstract »    Full Text »    PDF »
Rapid selection of accessible and cleavable sites in RNA by Escherichia coli RNase P and random external guide sequences.
E. W. Lundblad, G. Xiao, J.-h. Ko, and S. Altman (2008)
PNAS 105, 2354-2357
   Abstract »    Full Text »    PDF »
External Guide Sequences Targeting the aac(6')-Ib mRNA Induce Inhibition of Amikacin Resistance.
A. J. C. S. Bistue, H. Ha, R. Sarno, M. Don, A. Zorreguieta, and M. E. Tolmasky (2007)
Antimicrob. Agents Chemother. 51, 1918-1925
   Abstract »    Full Text »    PDF »
Ribonuclease P and the Discovery of Catalytic RNA: the Work of Sidney Altman.
N. Kresge, R. D. Simoni, and R. L. Hill (2007)
J. Biol. Chem. 282, e5
   Full Text »    PDF »
Genetic and biochemical characterization of Drosophila Snipper: A promiscuous member of the metazoan 3'hExo/ERI-1 family of 3' to 5' exonucleases.
J. M. Kupsco, M.-J. Wu, W. F. Marzluff, R. Thapar, and R. J. Duronio (2006)
RNA 12, 2103-2117
   Abstract »    Full Text »    PDF »
Engineered external guide sequences are highly effective in inducing RNase P for inhibition of gene expression and replication of human cytomegalovirus.
Y.-H. Yang, H. Li, T. Zhou, K. Kim, and F. Liu (2006)
Nucleic Acids Res. 34, 575-583
   Abstract »    Full Text »    PDF »
Effective inhibition of human cytomegalovirus gene expression and growth by intracellular expression of external guide sequence RNA.
H. LI, P. TRANG, K. KIM, T. ZHOU, S. UMAMOTO, and F. LIU (2006)
RNA 12, 63-72
   Abstract »    Full Text »    PDF »
Regulated expression of functional external guide sequences in mammalian cells using a U6 RNA polymerase III promoter.
E. KOVRIGINA, L. YANG, E. PFUND, and S. ALTMAN (2005)
RNA 11, 1588-1595
   Abstract »    Full Text »    PDF »
Dissecting human cytomegalovirus gene function and capsid maturation by ribozyme targeting and electron cryomicroscopy.
X. Yu, P. Trang, S. Shah, I. Atanasov, Y.-H. Kim, Y. Bai, Z. H. Zhou, and F. Liu (2005)
PNAS 102, 7103-7108
   Abstract »    Full Text »    PDF »
Characterization and Purification of Saccharomyces cerevisiae RNase MRP Reveals a New Unique Protein Component.
K. Salinas, S. Wierzbicki, L. Zhou, and M. E. Schmitt (2005)
J. Biol. Chem. 280, 11352-11360
   Abstract »    Full Text »    PDF »
Cross talk between the +73/294 interaction and the cleavage site in RNase P RNA mediated cleavage.
M. Brannvall, E. Kikovska, and L. A. Kirsebom (2004)
Nucleic Acids Res. 32, 5418-5429
   Abstract »    Full Text »    PDF »
Engineered RNase P Ribozymes Increase Their Cleavage Activities and Efficacies in Inhibiting Viral Gene Expression in Cells by Enhancing the Rate of Cleavage and Binding of the Target mRNA.
H. Zou, J. Lee, A. F. Kilani, K. Kim, P. Trang, J. Kim, and F. Liu (2004)
J. Biol. Chem. 279, 32063-32070
   Abstract »    Full Text »    PDF »
RNase P ribozyme inhibits cytomegalovirus replication by blocking the expression of viral capsid proteins.
K. Kim, P. Trang, S. Umamoto, R. Hai, and F. Liu (2004)
Nucleic Acids Res. 32, 3427-3434
   Abstract »    Full Text »    PDF »
Effective inhibition of Rta expression and lytic replication of Kaposi's sarcoma-associated herpesvirus by human RNase P.
J. Zhu, P. Trang, K. Kim, T. Zhou, H. Deng, and F. Liu (2004)
PNAS 101, 9073-9078
   Abstract »    Full Text »    PDF »
Intracellular expression of engineered RNase P ribozymes effectively blocks gene expression and replication of human cytomegalovirus.
K. KIM, S. UMAMOTO, P. TRANG, R. HAI, and F. LIU (2004)
RNA 10, 438-447
   Abstract »    Full Text »    PDF »
Disruption of type III secretion in Salmonella enterica serovar Typhimurium by external guide sequences.
J. S. McKinney, H. Zhang, T. Kubori, J. E. Galan, and S. Altman (2004)
Nucleic Acids Res. 32, 848-854
   Abstract »    Full Text »    PDF »
RNase MRP Cleaves the CLB2 mRNA To Promote Cell Cycle Progression: Novel Method of mRNA Degradation.
T. Gill, T. Cai, J. Aulds, S. Wierzbicki, and M. E. Schmitt (2004)
Mol. Cell. Biol. 24, 945-953
   Abstract »    Full Text »    PDF »
Catalysis by RNase P RNA: UNIQUE FEATURES AND UNPRECEDENTED ACTIVE SITE PLASTICITY.
T. Persson, S. Cuzic, and R. K. Hartmann (2003)
J. Biol. Chem. 278, 43394-43401
   Abstract »    Full Text »    PDF »
Engineered RNase P Ribozymes Are Efficient in Cleaving a Human Cytomegalovirus mRNA in Vitro and Are Effective in Inhibiting Viral Gene Expression and Growth in Human Cells.
H. Zou, J. Lee, S. Umamoto, A. F. Kilani, J. Kim, P. Trang, T. Zhou, and F. Liu (2003)
J. Biol. Chem. 278, 37265-37274
   Abstract »    Full Text »    PDF »
Programming peptidomimetic syntheses by translating genetic codes designed de novo.
A. C. Forster, Z. Tan, M. N. L. Nalam, H. Lin, H. Qu, V. W. Cornish, and S. C. Blacklow (2003)
PNAS 100, 6353-6357
   Abstract »    Full Text »    PDF »
Coordinate inhibition of expression of several genes for protein subunits of human nuclear RNase P.
E. Kovrigina, D. Wesolowski, and S. Altman (2003)
PNAS 100, 1598-1602
   Abstract »    Full Text »    PDF »
In Vitro Selection of External Guide Sequences for Directing RNase P-mediated Inhibition of Viral Gene Expression.
T. Zhou, J. Kim, A. F. Kilani, K. Kim, W. Dunn, S. Jo, E. Nepomuceno, and F. Liu (2002)
J. Biol. Chem. 277, 30112-30120
   Abstract »    Full Text »    PDF »
RNase P: Variations and Uses.
V. Gopalan, A. Vioque, and S. Altman (2002)
J. Biol. Chem. 277, 6759-6762
   Full Text »    PDF »
Effective inhibition of herpes simplex virus 1 gene expression and growth by engineered RNase P ribozyme.
P. Trang, J. Lee, A. F. Kilani, J. Kim, and F. Liu (2001)
Nucleic Acids Res. 29, 5071-5078
   Abstract »    Full Text »    PDF »
Cleavage of Bipartite Substrates by Rice and Maize Ribonuclease P. Application to Degradation of Target mRNAs in Plants.
M.L. S. Raj, D. K. Pulukkunat, J. F. Reckard III, G. Thomas, and V. Gopalan (2001)
Plant Physiology 125, 1187-1190
   Full Text »
Differential effects of the protein cofactor on the interactions between an RNase P ribozyme and its target mRNA substrate.
A. W. Hsu, A. F. Kilani, K. Liou, J. Lee, and F. Liu (2000)
Nucleic Acids Res. 28, 3105-3116
   Abstract »    Full Text »    PDF »
RNase P Ribozymes Selected in Vitro to Cleave a Viral mRNA Effectively Inhibit Its Expression in Cell Culture.
A. F. Kilani, P. Trang, S. Jo, A. Hsu, J. Kim, E. Nepomuceno, K. Liou, and F. Liu (2000)
J. Biol. Chem. 275, 10611-10622
   Abstract »    Full Text »    PDF »
In vivo inhibition by a site-specific catalytic RNA subunit of RNase P designed against the BCR-ABL oncogenic products: a novel approach for cancer treatment.
C. Cobaleda and I. Sanchez-Garcia (2000)
Blood 95, 731-737
   Abstract »    Full Text »    PDF »
Effective inhibition of influenza virus production in cultured cells by external guide sequences and ribonuclease P.
D. Plehn-Dujowich and S. Altman (1998)
PNAS 95, 7327-7332
   Abstract »    Full Text »    PDF »
Phenotypic conversion of drug-resistant bacteria to drug sensitivity.
C. Guerrier-Takada, R. Salavati, and S. Altman (1997)
PNAS 94, 8468-8472
   Abstract »    Full Text »    PDF »
Nuclear domains of the RNA subunit of RNase P.
M. Jacobson, L. Cao, K Taneja, R. Singer, Y. Wang, and T Pederson (1997)
J. Cell Sci. 110, 829-837
   Abstract »    PDF »
Maturation of Pre-tRNA[IMAGE] by Escherichia coli RNase P Is Specified by a Guanosine of the 5`-Flanking Sequence.
T. Meinnel and S. Blanquet (1995)
J. Biol. Chem. 270, 15908-15914
   Abstract »    Full Text »    PDF »
Inhibition of viral gene expression by the catalytic RNA subunit of RNase P from Escherichia coli..
F Liu and S Altman (1995)
Genes & Dev. 9, 471-480
   Abstract »    PDF »
Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA..
P Alifano, F Rivellini, C Piscitelli, C M Arraiano, C B Bruni, and M S Carlomagno (1994)
Genes & Dev. 8, 3021-3031
   Abstract »    PDF »
Selection of guide sequences that direct efficient cleavage of mRNA by human ribonuclease P.
Y Yuan and S Altman (1994)
Science 263, 1269-1273
   Abstract »    PDF »
A High Five From the First New World Settlers?.
T. Appanzeller and T. APPENZELLER (1992)
Science 255, 920-921
   PDF »
Relationships between the Activities in Vitro and in Vivo of Various Kinds of Ribozyme and Their Intracellular Localization in Mammalian Cells.
Y. Kato, T. Kuwabara, M. Warashina, H. Toda, and K. Taira (2001)
J. Biol. Chem. 276, 15378-15385
   Abstract »    Full Text »    PDF »
Effective inhibition of human cytomegalovirus gene expression and replication by a ribozyme derived from the catalytic RNA subunit of RNase P from Escherichia coli.
P. Trang, M. Lee, E. Nepomuceno, J. Kim, H. Zhu, and F. Liu (2000)
PNAS 97, 5812-5817
   Abstract »    Full Text »    PDF »
Inhibition of Escherichia coli viability by external guide sequences complementary to two essential genes.
J. McKinney, C. Guerrier-Takada, D. Wesolowski, and S. Altman (2001)
PNAS 98, 6605-6610
   Abstract »    Full Text »    PDF »
RNase P-mediated inhibition of cytomegalovirus protease expression and viral DNA encapsidation by oligonucleotide external guide sequences.
W. Dunn, P. Trang, U. Khan, J. Zhu, and F. Liu (2001)
PNAS 98, 14831-14836
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)